Microbes and Soil Fertility

There are still other holistic standards to measure soil

productivity. With more than adequate justification the great

Russian soil microbiologist N.S. Krasilnikov judged fertility by

counting the numbers of microbes present. He said,

". . soil fertility is determined by biological factors, mainly by

microorganisms. The development of life in soil endows it with the

property of fertility. The notion of soil is inseparable from the

notion of the development of living organisms in it. Soil is created

by microorganisms. Were this life dead or stopped, the former soil

would become an object of geology [not biology]."

Louise Howard, Sir Albert's second wife, made a very similar

judgment in her book, _Sir Albert Howard in India._

"A fertile soil, that is, a soil teeming with healthy life in the

shape of abundant microflora and microfauna, will bear healthy

plants, and these, when consumed by animals and man, will confer

health on animals and man. But an infertile soil, that is, one

lacking in sufficient microbial, fungous, and other life, will pass

on some form of deficiency to the plants, and such plant, in turn,

who pass on some form of deficiency to animal and man."

Although the two quotes substantively agree, Krasilnikov had a

broader understanding. The early writers of the organic movement

focused intently on mycorrhizal associations between soil fungi and

plant roots as _the_ hidden secret of plant health. Krasilnikov,

whose later writings benefited from massive Soviet research did not

deny the significance of mycorrhizal associations but stressed

plant-bacterial associations. Both views contain much truth.

Krasilnikov may well have been the greatest soil microbiologist of

his era, and Russians in general seem far ahead of us in this field.

It is worth taking a moment to ask why that is so. American

agricultural science is motivated by agribusiness, either by direct

subsidy or indirectly through government because our government is

often strongly influenced by major economic interests. American

agricultural research also exists in a relatively free market where

at this moment in history, large quantities of manufactured

materials are reliably and cheaply available. Western agricultural

science thus tends to seek solutions involving manufactured inputs.

After all, what good is a problem if you can't solve it by

profitably selling something.

But any Soviet agricultural researcher who solved problems by using

factory products would be dooming their farmers to failure because

the U.S.S.R.'s economic system was incapable of regularly supplying

such items. So logically, Soviet agronomy focused on more holistic,

low-tech approaches such as manipulating the soil microecology. For

example, Americans scientifically increase soil nitrogen by

spreading industrial chemicals; the Russians found low-tech ways to

brew bacterial soups that inoculated a field with slightly more

efficient nitrogen-fixing microorgamsms.

Soil microbiology is also a relatively inexpensive line of research

that rewards mental cleverness over massive investment. Multimillion

dollar laboratories with high-tech equipment did not yield big

answers when the study was new. Perhaps in this biotech era,

recombinant genetics will find high-tech ways to tailor make

improved microorganisms and we'll surpass the Russians.

Soil microorganism populations are incredibly high. In productive

soils there may be billions to the gram. (One gram of fluffy soil

might fill 1/2 teaspoon.) Krasilnikov found great variations in

bacterial counts. Light-colored nonproductive earths of the North

growing skimpy conifer trees or poor crops don't contain very many

microorganisms. The rich, black, grain-producing soils of the

Ukraine (like our midwestern corn belt) carry very large microbial

populations.

One must be clever to study soil microbes and fungi. Their life

processes and ecological interactions can't be easily observed

directly in the soil with a microscope. Usually, scientists study

microorganisms by finding an artificial medium on which they grow

well and observe the activities of a large colony or pure culture--a

very restricted view. There probably are more species of

microorganisms than all other living things combined, yet we often

can't identify one species from another similar one by their

appearance. We can generally classify bacteria by shape: round ones,

rod-shaped ones, spiral ones, etc. We differentiate them by which

antibiotic kills them and by which variety of artificial material

they prefer to grow on. Pathogens are recognized by their prey.

Still, most microbial activities remain a great mystery.

Krasilnikov's great contribution to science was discovering how soil

microorganisms assist the growth of higher plants. Bacteria are very

fussy about the substrate they'll grow on. In the laboratory, one

species grows on protein gel, another on seaweed. One thrives on

beet pulp while another only grows on a certain cereal extract.

Plants "understand" this and manipulate their soil environment to

enhance the reproduction of certain bacteria they find desirable

while suppressing others. This is accomplished by root exudates.

For every 100 grams of above-ground biomass, a plant will excrete

about 25 grams of root exudates, creating a chemically different

zone (rhizosphere) close to the root that functions much like the

culture medium in a laboratory. Certain bacteria find this region

highly favorable and multiply prolifically, others are suppressed.

Bacterial counts adjacent to roots will be in hundreds of millions

to billions per gram of soil. A fraction of an inch away beyond the

influence of the exudates, the count drops greatly.

Why do plants expend energy culturing bacteria? Because there is an

exchange, a _quid pro quo._ These same bacteria assist the plant in

numerous ways. Certain types of microbes are predators. Instead of

consuming dead organic matter they attack living plants. However,

other species, especially actinomycetes, give off antibiotics that

suppress pathogens. The multiplication of actinomycetes can be

enhanced by root exudates.

Perhaps the most important benefit plants receive from soil bacteria

are what Krasilnikov dubbed "phytamins," a word play on vitamins

plus _phyta_ or "plant" in Greek. Helpful bacteria exude complex

water-soluble organic molecules that plants uptake through their

roots and use much like humans need certain vitamins. When plants

are deprived of phytamins they are less than optimally healthy, have

lowered disease resistance, and may not grow as large because some

phytamins act as growth hormones.

Keep in mind that beneficial microorganisms clustering around plant

roots do not primarily eat root exudates; exudates merely optimize

environmental conditions to encourage certain species. The main food

of these soil organisms is decaying organic matter and humus.

Deficiencies in organic matter or soil pH outside a comfortable

range of 5.75-7.5 greatly inhibit beneficial microorganisms.

For a long time it has been standard "chemical" ag science to deride

the notion that plant roots can absorb anything larger than simple,

inorganic molecules in water solution. This insupportable view is no

longer politically correct even among adherents of chemical usage.

However, if you should ever encounter an "expert" still trying to

intimidate others with these old arguments merely ask them, since

plant roots cannot assimilate large organic molecules, why do people

succeed using systemic chemical pesticides? Systemics are large,

complex poisonous organic molecules that plants uptake through their

roots and that then make the above-ground plant material toxic to

predators. Ornamentals, like roses, are frequently protected by

systemic chemical pesticides mixed into chemical fertilizer and fed

through the soil.

Root exudates have numerous functions beyond affecting

microorganisms. One is to suppress or encourage the growth of

surrounding plants Gardeners experience this as plant companions and

antagonists. Walnut tree root exudates are very antagonistic to many

other species. And members of the onion family prevent beans from

growing well if their root systems are intermixed.

Many crop rotational schemes exist because the effects of root

exudates seem to persist for one or even two years after the

original plant grew That's why onions grow very well when they are

planted where potatoes grew the year before. And why farmers grow a

three year rotation of hay, potatoes and onions. That is also why

onions don't grow nearly as well following cabbage or squash.

Farmers have a much easier time managing successions. They can grow

40 acres of one crop followed by 40 acres of another. But squash

from 100 square feet may overwhelm the kitchen while carrots from

the same 100 square feet the next year may not be enough. Unless you

keep detailed records, it is hard to remember exactly where

everything grew as long as two years ago in a vegetable garden and

to correlate that data with this year's results. But when I see half

a planting on a raised bed grow well and the adjacent half grow

poorly, I assume the difficulty was caused by exudate remains from

whatever grew there one, or even, two years ago.

In 1990, half of crop "F" grew well, half poorly. this was due to

the presence of crop "D" in 1989. The gardener might remember that

"D" was there last year. But in 1991, half of crop "G" grew well,

half poorly. This was also due to the presence of crop "D" two years

ago. Few can make this association.

These effects were one reason that Sir Albert Howard thought it was

very foolish to grow a vegetable garden in one spot for too many

years. He recommended growing "healing grass" for about five years

following several years of vegetable gardening to erase all the

exudate effects and restore the soil ecology to normal.

Mycorrhizal association is another beneficial relationship that

should exist between soil organisms and many higher plants. This

symbiotic relationship involves fungi and plant roots. Fungi can be

pathogenic, consuming living plants. But most of them are harmless

and eat only dead, decaying organic matter. Most fungi are soil

dwellers though some eat downed or even standing trees.

Most people do not realize that plant roots adsorb water and

water-soluble nutrients only through the tiny hairs and actively

growing tips near the very end of the root. The ability for any new

root to absorb nutrition only lasts a short time, then the hairs

slough off and the root develops a sort of hard bark. If root system

growth slows or stops, the plant's ability to obtain nourishment is

greatly reduced. Roots cannot make oxygen out of carbon dioxide as

do the leaves. That's why it is so important to maintain a good

supply of soil air and for the soil to remain loose enough to allow

rapid root expansion.

When roots are cramped, top growth slows or ceases, health and

disease resistance drops, and plants may become stressed despite

applications of nutrients or watering. Other plants that do not seem

to be competing for light above ground may have ramified (filled

with roots) far wider expanses soil than a person might think. Once

soil is saturated with the roots and the exudates from one plant,

the same space may be closed off to the roots of another. Gardeners

who use close plantings and intensive raised beds often unknowingly

bump up against this limiting factor and are disappointed at the

small size of their vegetables despite heavy fertilization, despite

loosening the earth two feet deep with double digging, and despite

regular watering. Thought about in this way, it should be obvious

why double digging improves growth on crowded beds by increasing the

depth to which plants can root.

The roots of plants have no way to aggressively breakdown rock

particles or organic matter, nor to sort out one nutrient from

another. They uptake everything that is in solution, no more, no

less while replacing water evaporated from their leaves. However,

soil fungi are able to aggressively attack organic matter and even

mineral rock particles and extract the nutrition they want. Fungi

live in soil as long, complexly interconnected hair-like threads

usually only one cell thick. The threads are called "hyphae." Food

circulates throughout the hyphae much like blood in a human body.

Sometimes, individual fungi can grow to enormous sizes; there are

mushroom circles hundreds of feet in diameter that essentially are

one single very old organism. The mushrooms we think of when we

think "fungus" are actually not the organism, but the transitory

fruit of a large, below ground network.

Certain types of fungi are able to form a symbiosis with specific

plant species. They insert a hyphae into the gap between individual

plant cells in a root hair or just behind the growing root tip. Then

the hyphae "drinks" from the vascular system of the plant, robbing

it of a bit of its life's blood. However, this is not harmful

predation because as the root grows, a bark develops around the

hyphae. The bark pinches off the hyphae and it rapidly decays inside

the plant, making a contribution of nutrients that the plant

couldn't otherwise obtain. Hyphae breakdown products may be in the

form of complex organic molecules that function as phytamins for the

plant.

Not all plants are capable of forming mycorrhizal associations.

Members of the cabbage family, for example, do not. However, if the

species can benefit from such an association and does not have one,

then despite fertilization the plant will not be as healthy as it

could be, nor grow as well. This phenomenon is commonly seen in

conifer tree nurseries where seedling beds are first completely

sterilized with harsh chemicals and then tree seeds sown. Although

thoroughly fertilized, the tiny trees grow slowly for a year or so.

Then, as spores of mycorrhizal fungi begin falling on the bed and

their hyphae become established, scattered trees begin to develop

the necessary symbiosis and their growth takes off. On a bed of

two-year-old seedlings, many individual trees are head and shoulders

above the others. This is not due to superior genetics or erratic

soil fertility. These are the individuals with a mycorrhizal

association.

Like other beneficial microorganisms, micorrhizal fungi do not

primarily eat plant vascular fluid, their food is decaying organic

matter. Here's yet another reason to contend that soil productivity

can be measured by humus content.

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